PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g025180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 558aa    MW: 60281.6 Da    PI: 6.6554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g025180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16352398455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Sopen09g025180.1 352 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 398
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-21345406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-21346415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-17351402No hitNo description
PfamPF000105.3E-14352398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-19354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MNHSVPDFDM DDDYSLPASS GLTRTKKSAM AEEEIMELLW QNGQVVMQSQ NQRSVKKSHI  60
GNGSGGGGDA VIPSDQAVSR EIRHVEETTP HHLFMQEDEM ASWLHYPLDD PSFERDLYSD  120
LLYPTPTSTL TTAALPRENR TSTFEIRPPP PQPSPAAPIG TAPRPPIPPS RRTVTENSNR  180
FQNFGHFSRL PKARLEPGQA NLSKSPRDST VVDSSVTPIT GQESRVSLIP DNVVAVPGGN  240
VGCSTVNGST GTATASTAIR EPTTTCDISM TSSPGGSGNS VSASAVPPAP APAPSHKGAA  300
PTATAAAADD RKRKGREMED EGQNEDAEFE SPDTKKQARG STSTKRSRAA EVHNLSERRR  360
RDRINEKMKA LQELIPRCNK TDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPMMYPGMQP  420
YMPPMGMGMG MGMGMEIGMN RPMVPYPPLL PGAAMQNAAA AAQMGPRFSI PQFHLPPVPV  480
PDPSRMQASS QPDPILNSLV SHNSNQPRLP NFSDPYQQFF GLQQAQVALP QNQAVEQPSN  540
NKSGSRKEVG NPGNHQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088176.10.0PREDICTED: transcription factor PIF1-like
TrEMBLK4CU320.0K4CU32_SOLLC; Uncharacterized protein
STRINGSolyc09g063010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-39phytochrome interacting factor 3-like 5